Basic Information | |
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Taxon OID | 3300032770 Open in IMG/M |
Scaffold ID | Ga0335085_10000126 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 244261 |
Total Scaffold Genes | 237 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 202 (85.23%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Florida | |||||||
Coordinates | Lat. (o) | 26.5052 | Long. (o) | -80.2345 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F031402 | Metagenome / Metatranscriptome | 182 | Y |
F039315 | Metagenome / Metatranscriptome | 164 | Y |
F068015 | Metagenome / Metatranscriptome | 125 | Y |
F076358 | Metagenome / Metatranscriptome | 118 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335085_10000126211 | F068015 | GGAGG | MAKGNGLRGAAIRVGSAVGKVDAKAHKAVKAAHVELVAITKQVDALKRQLTQSTQRLKTALK |
Ga0335085_1000012639 | F076358 | GGAG | MSFLHFSHPRKVLCLFYSSAFLSALIFGAASYASVSYQRPLLVLALVTALAAAFFLVLFLRSRDERERQINYRALTFAFVGTFVFSLVVGLAQRLGFHSLSWLGIPVLMITLWSGGLILNSWRDQ |
Ga0335085_1000012658 | F031402 | AGGA | MKLADISPGSDVAYLSAAKIIAEQVEFELETCRRLLGTEPDKVLELLANTPDWSVFLDDEHL |
Ga0335085_1000012699 | F039315 | GGA | MTSLDKMSLAELEDLAAKLRHAIARNPGHSRMEQVELEDVKQWIAIRQNRDSESEA |
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