Scaffold Ga0335085_10000104

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10000104
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 274149
• Total Scaffold Genes: 251
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 186 (74.10%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000696	Metagenome / Metatranscriptome	931	Y
F032348	Metagenome	180	Y
F040915	Metagenome / Metatranscriptome	161	Y
F047834	Metagenome	149	Y
F054195	Metagenome	140	Y
F072549	Metagenome	121	Y
F081580	Metagenome / Metatranscriptome	114	Y
F094262	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_10000104139	F054195	GAG	MNPYWLVVAFTLLTQLFVFLRWLHRRLRDAAIERAFVRDIATNHLPHIYHALRCIAAHHRIEIDDPPPVRFLELNGRDKSDPRHP
Ga0335085_10000104145	F032348	N/A	MQVRAYTGADLEFLRAMHAAQGFGYAFPDVGDPLFLVRSVVEEEGRPRMAALLRLTAEAYLLADPREGSPSQRWRWLLALHESVRQEAAARGLADVQAYLPPPVARAFGRRLAALGWRRDPWTCYTRQL
Ga0335085_10000104149	F000696	AGGAG	MPIVGSTAYNTASQATSLVRSLLNDAAGNLFTDTVLIPYANSAYRKVQRALANVGSGGFLADDALLVVSAVASTDPSAQVCITDATAPPNQLPIDLLVPLKLWERPNGSCDDFVEMTDLTNHGGLPSQPQGLNLQYWEWRADGLYFLGATQDTQLRLRYEKALAAFVDGTSPVLIRDAIEPIAYFTAAMAAAARGAPQAARWDDAGSEALEDLLLRATHREQRGGRRRRPYTWRQGYGPI
Ga0335085_10000104153	F047834	AGGAG	VPRAMITVIREQHEAPESVANRLALAGGYNRFGEPNYRAVWGWSRLAWVGGKWEDRNAAGELVRECVELRHVPKYAPHDRWHIERWLPPEAYGSPRAWYAQTLERGDALAAASIPALGPYPERGEYEHCVTLEDSHGQFVQLTPTVAEYIAQAIESGRRASSAERRKAIEERERRSEREYDNWAWDVLDSGCPAFHGMPFVGVL
Ga0335085_10000104159	F072549	N/A	MLIGNVMNSLARWREGMRGRYVRLLEAEIERLRAEIGRLRAENRALLNSLLGTAGVPPIEAHPAQIAPIRRRSWSQIAATREIEAAREGVARERTSRPSQRQAGS
Ga0335085_10000104167	F094262	GGAGG	MPTYSNTTPPSAIWPGDSAQVWSAEQPAAGSGGASASSRLALGMQRGSPGGFAVTGFFSAAPGSFEIDVQVSDVDSDTQYQTVANGNITSVDSTNQTFHFDGSSVLATFVRLLMRSRTNAVNVTADVRRL
Ga0335085_10000104211	F040915	AGGAG	MRGSADTARMLDVRSCRAFFRFEIACQDQPLKVRLESTPNFSHLEIHAIRRPFFGVKFRHIVSLAFLSPSSVASFRGPNSDPENGVCFAVSRQSREIIEPAALYSHSAFLNFRPHASSEGEQCMKDPDHPIRHPLRHPRIFGRGRNRRSCAWHDDQFGRGQNNGLGWSDPTCVHGSVPKVIRGVAPAQLRGDRAECFVRAAFCNGGHSDEQRR
Ga0335085_1000010426	F081580	AGGAG	MFSNTESDCPEYQASLEDAVRDGAACIEPGSPLQRHLGSCAGCQQALSDAVTASKLMVHARPLREPSPAFVTRVMASVREASQAAPTIWRPLELLASRVALVAAVILLALSVYLREFAPARDTAAINTGTEIGAGLPEPPAQPANADEVLMSLADPGNI