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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032770 Open in IMG/M |
| Scaffold ID | Ga0335085_10000103 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 274597 |
| Total Scaffold Genes | 283 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 193 (68.20%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5052 | Long. (o) | -80.2345 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032396 | Metagenome | 180 | Y |
| F052953 | Metagenome / Metatranscriptome | 142 | Y |
| F103617 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335085_10000103262 | F032396 | N/A | MAEMERIASLVRDYMHAEADAGYPLLRRIPSTHATACFDYLESISPTEREEFLDAHARVTALGFVLTPATQQEILQLVESNPGIVKYRNAKQQGPFAMGLRYQSIRMAKAMLNDAQSVAMMRQTRSTLGYLPRDDAPVPLVNDPDVTKLHPAKAPQLKKLVKPLLQGFLGAKEEKMPGGTMKYDGVLDQTSVTVRIDYAGRDVQMIYSVSIPDTERKVVVVGTTYERFFGISGTGWDYITEENAAASIGLLPELLRRLVVLRNEVARLL |
| Ga0335085_1000010337 | F052953 | AGGAG | VSLDTLETANGSNGIEIDECAFENPEAAWREMREVVDEIERNYSLGEISEDDWEIYVEYCAALGEPVSERDLLRRKHPELYPEEIDFMLSPPQDGDCPF |
| Ga0335085_100001035 | F103617 | N/A | MAAEAEKEVSGLELLRQPATLALAGYLNDLHSVLGFEAYLWRTIVKADYSHGEPTKLPKPGDLPPPESAVAQMDIHSAVLGEMVFCRGVNSFLTYLADLMTLIYEKYPKKLPSNKQTTYRFCIEHHLAGDLISALAEETVMELTHQGLDALANYFKKNLDLVLFTTNDHSANAGLCVDIRNIITHNRGIVNRFFIQQNPRFADDLGKRVVLGERERREMLGTLGYCARQLDLRAIKKFGLETIQPELKESANIPSPDGAA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |