Scaffold Ga0335085_10000100

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10000100
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 278844
• Total Scaffold Genes: 242
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 194 (80.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002916	Metagenome / Metatranscriptome	521	Y
F012620	Metagenome / Metatranscriptome	279	Y
F042041	Metagenome / Metatranscriptome	159	Y
F071116	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_10000100124	F042041	GAGG	MKLSHRIAVALTMALGFTPGAWAQGCVLCYTSLSNSGPGAMHAFQMAMFALLIPALLLFLGVFLLIFLRARTRPAAPATMRKRVNAVRPIPHINPAEGRA
Ga0335085_10000100159	F002916	GGAGG	VRYLPGWTVQCINPECQARGHWLRADSAPEDHCSNCGELLHNVPPPLASRLRLRPRPLTVYRPGRAR
Ga0335085_1000010018	F071116	GGA	MPVVFIVSREWDLRGAVRAELREAGIAAMGMETVDDMARTIAGGVAPDLVVLDGDYLHHPPTRQAVQNLASRVPVLVVDSRANPAPPLPGAELLSRPVQVKEIVARVLARLGAARS
Ga0335085_10000100184	F012620	GGA	MKRDTIRTTVDVPAPLYRKLKEQAAAQGRSIRELILRGISNSLLESKRPRPKRVRFPLIVSRGPKVDLTNEKIYEHVEFP