Scaffold Ga0335085

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10000088 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032770 Open in IMG/M

Scaffold ID

Ga0335085_10000088 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	311902
Total Scaffold Genes	271 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	200 (73.80%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

311902

Total Scaffold Genes

271 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

200 (73.80%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002889	Metagenome / Metatranscriptome	523	Y
F008612	Metagenome / Metatranscriptome	330	Y
F037604	Metagenome / Metatranscriptome	167	Y
F049513	Metagenome / Metatranscriptome	146	Y
F052715	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000008810	F002889	GAGG	MYRSTYSFCFLVLTMVGLGGCSSGPSPNASKSAKPPDRIQGKVQEVMTETTATDVALNAGGPSVYLLGGLRRYRLFFRTGFEIDAAKEYVAEGVDAQKTIDAIGDPDQGKNGYPLASSCLSVVRKAWPGLAMDVTDLHAQVLCARIKRYPARHVFLVTHMREATAEEKAAKAAPAAAEGEDIAEVTVPADKQRALLIAGPTVETAPLWDPEGGTAHCKLVIDKDGKVSDLETGAQLCEYVPWSEFSYKPTAKRGKPVSVETEVDVRFEARK
Ga0335085_10000088201	F052715	GGAG	MPEARSKFVERILDTKPEDGKAFTSERQLTAQAFNLHVERRDGRHSEGFAWSHYVGYQWTDDGAHETLVLLFGTRAIEIEGHNLGVLVAEIREGQLNGIKELTSAQATLKQANAEKEPIISGIKMYPDFAEILRDIKGEDDDKNRHARKFER
Ga0335085_10000088228	F008612	N/A	MPIRAEYRKYYDARWRKFRLSMLEAAGNVCQMCHQPHRLLNVAHLSPDPADRTALTVLCPSCHSKRNAAQRVATARRTRARKRGQMWLSGELEVAPMPVRLWPMRLRQMDLF
Ga0335085_10000088264	F049513	N/A	MAESTVAPLESAQAATEVETNAYGASADFDVRGLGRRVPRTAAPEGWIKKIHRPREGKVWVGFFHLWTTSSDGRRVRQKKEKTLGPASMPRHEAHEQLADYVTEYTGKLAQQGTSISTFSELWRVFCAVKSGLWSKKTKENLQCLFRKHVIPVVGEQRPREITLTSLQLLLNKMAEDRYCRSAVGQVRAYIKACLEYAVDEGIIEKNPARKLVMPNIKKKSCERFLTVPELRALLLYAPPRDGLVPIFETTG
Ga0335085_1000008883	F037604	N/A	LFYTAEVTPHLVPLDDNEIKMLLVAIRQVQHTFAIADAQGPAGGEPVTGGYDSVREAYAELHSKLSALAGLPPAGPRLVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335085_10000088

Overview

Ecosystem & Geography

Associated Families

Sequences