Scaffold Ga0335085_10000021

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10000021
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 588913
• Total Scaffold Genes: 529
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 423 (79.96%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014286	Metagenome / Metatranscriptome	264	Y
F014958	Metagenome / Metatranscriptome	258	Y
F043035	Metagenome / Metatranscriptome	157	Y
F058358	Metagenome	135	Y
F081573	Metagenome / Metatranscriptome	114	Y
F084500	Metagenome / Metatranscriptome	112	Y
F099102	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_10000021114	F081573	AGGAG	LRPGWTKSWRCTSLVLAIAFTAPVSPAQRNAAVPREDAPKRANETTLAGLRPGRDALAAAFKHYKEKYVLSKTSTTSKEWRDTCTGHSLALAIDPRSIVQQVTVSLLVPHDGNCDNRRFEFLNLDDWITGKGLRLGDSRNRVVELYGEPNSSEPVVRGDADFELLEFDFGWAGADVPQAMQVYCERDSGRVVEIALLAATRPGTKRATNATE
Ga0335085_10000021197	F043035	GAG	MASPSHLFRVVNEFVFMLAGALLALFALTRPYLVNARQPGWIVLSAVLVLWGLGTWRRARRSVDHAERLVTKIAGGSLVLAGLIMLSLAWAPFQWAGWMLLATGGIFVLRGLVSAAIMVRSA
Ga0335085_10000021252	F099102	N/A	MVISLLICIAAVVLEVCTLLLLSRRSLWRAYPFLLAYVIWLVVGNSAILVSFISYLRMAPEVRAHSLYPSLYWHSDTLDVVLRFLLVWEIFHQTFPKGSGLNRSLSKGLGITAFLLLVFAGATFWGYQNYTSLRSVHLALDRSFDFVQAVMILGTLVMARYYGVRFGRNVRGVALAFGGWVSISTVNSAMVDLTNSFLPYWYYLRPLSFLVMMVAWIWALWVYEPNPPILESGTAELNQWTEDWNRTVSAARTIIRP
Ga0335085_10000021253	F014286	N/A	MINLILFTVLGLALFGSFIFIGLRDSPKGLPDSSAVLAVGQIINLEGSSFANARRLLDDTDYQVLCSNPDLRRLAERLRHDRKQLALTWLSLLQNDLLTLWRFRRFLIQRGVPSSLGEELRTVQALVLSLLLLKCIGLSIRTAGPFALPRATRQAGQLVDSMSKGAALVLGRIPAAGWAEIERSWVKSAA
Ga0335085_10000021421	F084500	GGAGG	VNKQVWRVWRNWLSVILPMVGGFIAAAVGFRMLILTDFSNSGWDFMGRCGADALGFFFVAGICWLKLHPGLGPEDEDSH
Ga0335085_100000215	F014958	GGAGG	MKTNRFRNFLWVAPIVVILMWQLPAHLRAQAGGQFNVSKDIMDHKGILNWKPAGNGIPSDVCTILQVCNGETKVVALPRATENGLPIARGVFLTQDAKHMDVLVLERQSTADIYFFLLTPQGTLAKAAYAQVGGTSWIPMGMALADPTFKKDAVVWHTWASKLASGPATAAADKKPEA
Ga0335085_10000021500	F058358	AGG	LHCKIPSVTSVPSLSTRMIVSFRSNAFNTSSPEKHFVSVRAFGSDLANWLIHELARRDAAVEPMISHKDVGWIVRFNFRGAAYDFLILYRHPAWLGLLERRRGILARIFHAQPKNVEFDALRLIDDVLSSPDLISDVRWHYDESDGIISDAVN