Scaffold Ga0335085

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10000011 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032770 Open in IMG/M

Scaffold ID

Ga0335085_10000011 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	749584
Total Scaffold Genes	656 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	471 (71.80%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

749584

Total Scaffold Genes

656 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

471 (71.80%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012906	Metagenome / Metatranscriptome	276	Y
F016294	Metagenome / Metatranscriptome	248	Y
F039018	Metagenome / Metatranscriptome	164	Y
F046807	Metagenome / Metatranscriptome	150	Y
F080968	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000001110	F080968	GGAGG	MTTKTDILPESDRHAADRYLESLFDSDEPLAPGEIEQIQDTLAAIRRREMTVVEFERKHG
Ga0335085_10000011171	F016294	GGAG	MNLGKYFTMGFTMAVLALGLTTVRASAEPVLVGTFELPTATYWGDTLLQPGQYTISMSAQSHDIASVPVVRLSGEGIEATFLAIARPARESGRSSLEVANIDGTYVVRAFDAGIIGESFSFGVTKTVKNKALRASAQPTMSVSVSSVAGR
Ga0335085_10000011513	F046807	N/A	MTALLLLMLAAFARVDLIDATYEIPASDWRYVPRPVTQEPAWVDCTFDAGRPDARVRVVLLSHDDLDSWRVGRDHEELATTPVGPRGMLRMSVHDADTYVAIENRGSRAASVRLRVFLEQPHARYLSTERRVAVILISLAVFFGIVTFSARRLLRSIRR
Ga0335085_10000011590	F039018	GGAG	MLYARSHNADYLLDRVEGVRISSRLPCDGSTNPQEELKMQTTFSPSGWQKSFHLDVFQSQYCKRLDLYFFCVMHGHDRWKHEWVANSQGIPGPRMYWINACSSWGAKDSQEYILSGWYQEGEASNKLPWKQAAIKQVSKVPEIYEFTDPQGGTARLEIKRN
Ga0335085_1000001198	F012906	AGGAGG	MNLEIHRPELVRRVQAQIQSGHFHNTDELIEKALDALDVQEAAASPTATGAVVLAALQARPYPDIDLTPPRVRLTNVRDVVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335085_10000011

Overview

Ecosystem & Geography

Associated Families

Sequences