Scaffold Ga0335085_10000004

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10000004
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1343036
• Total Scaffold Genes: 1182
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 814 (68.87%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000400	Metagenome / Metatranscriptome	1181	Y
F008612	Metagenome / Metatranscriptome	330	Y
F016294	Metagenome / Metatranscriptome	248	Y
F037604	Metagenome / Metatranscriptome	167	Y
F046807	Metagenome / Metatranscriptome	150	Y
F049135	Metagenome / Metatranscriptome	147	Y
F050946	Metagenome / Metatranscriptome	144	Y
F054188	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_100000041020	F050946	AGG	MAERRLFSWRQFWHSFAAVVLGNAVYFEFDRFLPVAGRHVPFKIDWGLAIDFWCCVVVYFLLAPIKWFKR
Ga0335085_100000041022	F049135	AGGA	MEFNHIHIRDGDDWICGRSLAFEDQELIRTEARDPDEEEACLRCSGQILAYFGDAMHVQ
Ga0335085_10000004394	F054188	AGG	VRLLSYGVISVLLALAGSSPLRSQDPAAAQQPQDQYFAGIVTALSETSVTVTRTVLGKSTVRTFAITAETVIQGGKPRLKAKVTVKWVSSDDGDRAVKIILRGAAPPPKKS
Ga0335085_10000004489	F016294	AGGAG	MNTRKYLVTGLALIALVLGFTAVQAKAEPVLKGSFELPAAVYWGNTLLPPGEYTIWMSTEVRDLAHVPMIHITGEGVTLNLLAVGRPLPESGRNVLEISDLGGTHVVRAFDAGLLGQSFAFGVTRTVKSKALRASNDPATMVVVNAGF
Ga0335085_10000004634	F046807	N/A	MIAVLLLLAAFSRVDLIDEHFEIPASDWRYVPRALTHDPAIVDCVFQADRPDAQVRLVMLSEADLNAWRMGRDHEEAATTPVGPRGLLRVSVHDPDTYIAIENRGTRAAGVRLRIFLEQANVRYLSRSRQLAVILISFGVFFGIVTFSARRLLKAIRR
Ga0335085_10000004778	F008612	N/A	MPIRAEYRKYYDARWRKLRLAMLDAAGNVCQMCHRPHRLLNVSHLSPDPADRTALTVLCPSCHSKRNAAQRLATTRRTRARKRGQMWLSSELEVAPMPVRLWPMRLRQMDLF
Ga0335085_1000000489	F037604	N/A	VPPYLVQLDENEIKMLLVAIRQVQHTFAIAEAQSTAAGEPLTASYESVREAYDKLLHKLESLGGGPGKPRLVR
Ga0335085_10000004939	F000400	GGAG	MRDPQIIDAELMEIAALADDTLKFERLVAWCASHPDEVPFVLHQFLGRREKHRPQPSQP