Scaffold Ga0335085_10000001

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10000001
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3096523
• Total Scaffold Genes: 2639
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1891 (71.66%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000236	Metagenome / Metatranscriptome	1499	Y
F000626	Metagenome / Metatranscriptome	976	Y
F001077	Metagenome / Metatranscriptome	785	Y
F001450	Metagenome / Metatranscriptome	692	Y
F002079	Metagenome / Metatranscriptome	596	Y
F002623	Metagenome / Metatranscriptome	542	Y
F004287	Metagenome / Metatranscriptome	445	Y
F004609	Metagenome / Metatranscriptome	431	Y
F026212	Metagenome / Metatranscriptome	198	Y
F035719	Metagenome / Metatranscriptome	171	Y
F046088	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000000113	F004609	AGG	MKSPASFRVLAVTTLSVLLIGAALARQGTTMAPDAKTMTIEGAVRDLACPIQNPAGTATSFSLQCTLDCVKHGSPIIILTKSGLIYFPISKDMPDSSQREKMMPFVGKYVQATGPVFMRNGTRAIAITQIKELKSVHIDTDAR
Ga0335085_100000011627	F000236	N/A	VEKKIFWATFTILGLGADLFLPLWWAVIATLPIFVFSWWVAYRSNWF
Ga0335085_10000001169	F026212	GGAG	MLDLRSNEVLLARMDEAFSDYSREAEKLSVLLAERKDPSSWTGYHDLMKQRTAEVAAYEKYRALRDELFKLINPPPDLDRPQSSIN
Ga0335085_100000011972	F046088	N/A	MNGWYIFWMANFVVAGSAFAVITLIVLVRGVKDLRDMLAGLRAEANRR
Ga0335085_100000012157	F035719	AGG	MRRMEVTIKVPDKLAAEARAHGVSVEVYVQEILARQALQATGEQRLQSVRAAIDRILELRKGNKLAGLRTKDLIHEGHKY
Ga0335085_100000012460	F001450	AGG	MIQVTRETHETPPEVARRMASAGGLNRFDEPHFRVVWGGSRLTLIGGRWTDRDPHGNVIREVIELRHVPKYLPINRWHIERWMPPETYGSPDRWYAQTIEIEDGIRIPALGPYPSRGEYEHCFTLENGRGEFVPLTPTACDWIVRAIRWARLQPATASRAAIRQREAREERNWDQRASDLLDDLM
Ga0335085_100000012461	F004287	AGGA	MTMTQTAGRRDILLETQSKGDVAATVSIASISQQDWYISRTHGVYHIPACPKGEPYALLLITSRGDALDLGDNRRFPFTISAREIADDLLQDLQDHGTFVCAGARPTSEELAAATARRDSFYQRLVGEGDTMWARGHSFREISDLHRRAAIALGIEREWAYVPARMVDCPACGEKVKPGVAVCRHCRAILDPEKAAAHGLCSPKADGAPGSKSPSGAPERDSNHNDNKNSQVLAAARPPARS
Ga0335085_100000012469	F002623	GAG	VIRLYQESDLAELRRMHAQQGFDYEFPDIADPIFLSKLVVEDERGNIVMASLARITCEMYLLTDPAAGTPRERYARLLALHEAGERDLLQRGLEDAHAWLPPVIAKRFGRRLASLGWVRDDAWTPYCRRLSLK
Ga0335085_10000001258	F002079	AGGAGG	MTPDANSMVWIPVCCGRVMRCNMFRQADGGAYAALVCTVCNKNITLEREPLAAANTYGEGSSVLSLLGSPKPPKTDRRSISDIGSDAPTL
Ga0335085_10000001416	F001077	GAG	VFYQLTWQTLPGLRGLSCSEFRAIATAAPNNEQGVAFEAENDAERDALLRELEDRFAPQRFSNNAVAFESVKAFVLERATKRGASCG
Ga0335085_10000001725	F000626	AGGAG	MPIVKKAPGITTREIKLEEPVNELLEDYARFIESNADHVVNAVLKKVLWRDQDYRKWREARRNSQPSSEKAQPVEARGRA