Scaffold Ga0316224_1002434

Overview

Basic Information

• Taxon OID: 3300032753
• Scaffold ID: Ga0316224_1002434
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18013
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17240
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F007848	Metagenome	343	Y
F017287	Metagenome	241	Y
F086796	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316224_100243416	F007166	GGA	MDEMYEVMNEMEQRLEAALDNMEYGTELAQDDIDVIRAACGKSKPKNETLTNLFNDFGTIFGDNHV
Ga0316224_100243418	F007848	GGA	MKDFLGACLLGAVLGCMFAYGVPAKAQTVQLTDSRGYSMGTVQINGNTAQFVNPMGYTTQTATIYPNQITIQNPSLSSNAIVIGTPSYTVPPSPPVPMSPRVMQ
Ga0316224_100243423	F086796	GGA	MNDYCVPYLNIQKLLKKYHNAQLKGKSELATKIAHEIADETIRLEIASIKKLKNQWINQ
Ga0316224_10024348	F017287	N/A	VKYDKSYIRKVFEGEAPCDKCDQTLNCQEFELACRAFSYYVLHGTFHEHTVRHPTHGLFNKIFKEDEKSLKNYLKGKDNV