NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325414_1061485

Scaffold Ga0325414_1061485


Overview

Basic Information
Taxon OID3300032741 Open in IMG/M
Scaffold IDGa0325414_1061485 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdKOR-R3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2119
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011092Metagenome295Y
F026451Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0325414_10614851F026451N/ALKPFLRKAWSFLTILTWTGHLILRPFLRKAWSFLRILRWAGHPILRPFLRKAWSFLKNFKRGRLPDIETVS
Ga0325414_10614852F026451N/ALKPFLRKAWSFLRILTWTGHLILRPFLRKAWSFLRILRWAGHPILRSFLRKAWSFLKNFKRGRLPDIETFS
Ga0325414_10614853F011092N/AGYLILKRFLRKAWSFLRILRWAGNLILRPFLKKAWSFLRILRLAGHPILRPFLRKAWSFLKNFKRGRLPDIETVS

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