NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325414_1003004

Scaffold Ga0325414_1003004


Overview

Basic Information
Taxon OID3300032741 Open in IMG/M
Scaffold IDGa0325414_1003004 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdKOR-R3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17432
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (40.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034007Metagenome175Y
F040184Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0325414_100300417F040184GAGMQSYHLYIDLLESHTLSFFLFFLEHVYVQVVVIVAHIFPWFYSQERLKRPLWVGDKLSIQFS
Ga0325414_100300418F034007N/AMSGTGKSTFAKKCRAKRLKVCHRRARWTCNAQCRYLGMISINHEDKIQFIKDDLSKESLDNLLVTLETHPSGDVHRAIHDL

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