NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325411_1043235

Scaffold Ga0325411_1043235


Overview

Basic Information
Taxon OID3300032740 Open in IMG/M
Scaffold IDGa0325411_1043235 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2910
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037820Metagenome167Y
F055312Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0325411_10432352F037820AGAAGVTREFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLLSRVTREFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLLSRVTRGFDSRDIPLGTQKLLSRVTRGFYSPDSPLGSQKLLSWVTRGFDSPDGPLVSQKLLSRVTRGFDSRDSPLGT
Ga0325411_10432354F055312N/AVTRGFDSPLGSQKLLSRVTREFDSPDSPLGTQKLLSRVTRGFDSPLGSQKLQLMVTRGFDSQTAP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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