NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325410_1112878

Scaffold Ga0325410_1112878


Overview

Basic Information
Taxon OID3300032735 Open in IMG/M
Scaffold IDGa0325410_1112878 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)626
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018654Metagenome233Y
F038922Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0325410_11128781F038922N/AFGAVAGEVVLVDSCACTVIFICCDSKKKKEKQNFCLRRYCSLAAAVLFKTEFLVELDIGLLFSEGKRHSEQD
Ga0325410_11128782F018654N/AMPVTRSTNQIQVQVDLEIESTLRRLRKEARLNTMAVARQQTLKEFAAPNVENQPLCINIDNNVNFELKSGFIHLLPTFNGLAG

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