Scaffold Ga0325410_1056874

Overview

Basic Information

• Taxon OID: 3300032735
• Scaffold ID: Ga0325410_1056874
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2044
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010037	Metagenome	309	Y
F012319	Metagenome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325410_10568741	F012319	N/A	VAEAEIFMAQRLLQNQKSLTKTDSLQTHKSSPEHSSAAEAEIFMEQRLLQNQKSLTKTDSLETHKSSPEHSSAAEAEILLA
Ga0325410_10568743	F010037	N/A	LTKLIRCRPTNSHQNTVLRRKLKSSSHIDYCRIRNHXGKLIRSRRTNPHQNTVLWKKLKSSWHKDSCRIRNHXRKLIRCRPTNPHQNTVLPQKLKSSWHKDYCRIRNHXRKLIRXRPTNHHQNTVLWQKLKSSWHKDCCRIRNHXRKLIRSIPTNPHQNTVLRQKLKSSWHKDSCRIRNHXRKLIRCRPINPH