Scaffold Ga0325410_1015832

Overview

Basic Information

• Taxon OID: 3300032735
• Scaffold ID: Ga0325410_1015832
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7456
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000433	Metagenome	1147	Y
F005406	Metagenome	401	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325410_10158322	F000433	N/A	MVFQFGLNQHLFSKLSPLFVFSISVVKLINQSFDLYDGPAFKMNIYHKLKVFYIIRHIIIKHALVKEILILQVQNDDIKP
Ga0325410_10158327	F005406	GGA	MDQVQSVITLHSGKVIKKPILEPCEKDDESIFEGKERVKPEHCKEKTDSPPVLPFPHAMTKQREVNHDYEIFETFKQEEIEDKKSTKNVVADHLS