NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314714_10033490

Scaffold Ga0314714_10033490


Overview

Basic Information
Taxon OID3300032733 Open in IMG/M
Scaffold IDGa0314714_10033490 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Amb12_26May_surf (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2074
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location NameNorway: Bergen
CoordinatesLat. (o)60.2696Long. (o)5.2187Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005141Metatranscriptome410N
F052362Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0314714_100334901F005141AGCAGGLKTHVFACERWMVFSDVEMKLDTNAGGFVKVAYPKGIRRPNTKNYVNLPVFLNVWRAIKADTNWKSFPWVAKADPSTVFIPQRLRDIVGRQVVTESGVYMENCKYVRMGFHGSLEVFSALAFSKLLAHMEDCQTRLPIHDADHAHFREYGEDKFAAWCMHLEGVDKIPSRQQVDTIPEDSMIQGLHITVSCPGHRTKFARTMKKWHPNCTNTRSAGLHAFRKPAKWAKCFSETMKLGAYEIGMNS
Ga0314714_100334902F052362GAGVATELTREHCESEQQRKAFPTKAVVLGICIALAFAATIAIKEMPTADNEMMDGALIDFAEAKQNTPKKVKLFPKPEECSMAKTQNCMTSKCCDNFGFQCYQKNTTFSACLKKCDATKMAAAGNGTWSCAEVGVRTRCASTSENCLPYGCCADAKHQCFAKNANWGQCRISCDAAAMAATDAKSECAPIGPRNSKDYRGDFLPSFTEVEPWVKNCTPIGENCASTKCCSWTGYKCYEKNTTWASCLMGCHPQKWNGGVAQVPLVQKGKPLANQPAHWNVSFTPASPGPWTCKRLSPPMKSGKFNGSSLFCFSVAISDTGGKKTKHGCRSPQAGAAVENTRVCLRALDGVQ
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