NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316225_1025745

Scaffold Ga0316225_1025745


Overview

Basic Information
Taxon OID3300032675 Open in IMG/M
Scaffold IDGa0316225_1025745 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2526
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059597Metagenome / Metatranscriptome133N
F102398Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0316225_10257451F059597N/ALEGAEVIKREAKNIFRTGADAKGIDSWNSNAWPVPTRRTGNLMNSIYSDGARKLGPGKWESQTGPHIVYGRRIELGFHGSGRWPYYTTRPFPYMQPGIDNSIPRLDALFNSLVIAAQEA
Ga0316225_10257454F102398AGGAMTLASLPTLSVQIAFTPTNIQSLTQTWTDVTPYVRDFTTRLGRQHFLDRVEAGTLNMTVNERTGFFLNGSVNGTGYVIQPRLPIKVTATWSGTTYPVFYGLI
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