Scaffold Ga0316232_1140537

Overview

Basic Information

• Taxon OID: 3300032605
• Scaffold ID: Ga0316232_1140537
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18025_13
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1030
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y
F047435	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316232_11405371	F047435	AGGAG	MTKLTLLAVLGLIYLGVLRLAYFFMAVFIILFFGMTTWELVRTAGQ
Ga0316232_11405372	F009261	GGAGG	MILTPSNTGNLVAGAGLGIFAWSAFLKADKVPWLKKLMTTKRKELSLDWINRNKGISLLGLEAINLGIHGILSANAVIFALGNTILNIFMLWAFLPFRMARAEKLRIHNVLKGVA
Ga0316232_11405373	F005296	GGAG	MAAWLLWFLPSFEAGFWSALIAGKLRGRGRTRELLVYGRHVRTCLPLIDDRLRKAAGTPTKSQAFAARRIAAVLRWLANTRAMDYAILLGLKRIWPKGQAISTEVKVCL