Scaffold Ga0316232_1131392

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316232_1131392

Scaffold Ga0316232_1131392

Overview

Basic Information
Taxon OID	3300032605 Open in IMG/M
Scaffold ID	Ga0316232_1131392 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18025_13
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1079
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.0411	Long. (^o)	-89.6861	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037037	Metagenome	168	N
F062382	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316232_11313921	F037037	N/A	KGMLLPSPRVVYAYPYESMEVGDSFTVPVVARAKVLNANYRASKKLGFKFSSKSEGDNLRVWRVA
Ga0316232_11313922	F062382	AGGAG	MIELLWMNEDELREHCHLLVEALLVSELHRVELVNNMGKALAYGYNRGYTDASVQLKTETQAGDAASVVLH

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