Scaffold Ga0316226_1051263

Overview

Basic Information

• Taxon OID: 3300032562
• Scaffold ID: Ga0316226_1051263
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18017
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2135
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F030333	Metagenome	185	Y
F034448	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316226_10512631	F015302	GGTGG	MKDEYYKDQAARLDTIIGGDTQHFLRLQRVKNEYDELAYAVPIGQGFLTFDDYVKEYYGIKLQFDGDNVSLSYEIINDKKYTMFLLKFNR
Ga0316226_10512632	F034448	N/A	MHVNNFSLPRPPEQALNQCHLVVVNDPVFRMWAMKKFCREQKLSLIWSELVDTTDVSAYFDEAAAFYFIDPADATLFRLKFK
Ga0316226_10512633	F030333	N/A	MVGERNPQLTVSVKTSSHYTECEPWCMCNIGNWNVTWWRDFPDIAMSVALGQGPQPETYWFTNEQDALMFTLKFR