NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316222_1016500

Scaffold Ga0316222_1016500


Overview

Basic Information
Taxon OID3300032561 Open in IMG/M
Scaffold IDGa0316222_1016500 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4458
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023104Metagenome211Y
F030373Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0316222_10165002F030373GGAMLIQDDDYIQMARDYEAMERQAVEDAEELRQLREGLRIIVPHDVEHARTMFKLASYYLSQHDPEFALDLA
Ga0316222_10165006F023104N/AMNILNLRFEFTNPFDRWDFFKNLGCLHGDMGMYKAWELEHTYYSPLLLDCELSLIHRCDHPGFEIGIGILGYCIHFRIYDTRHWNYDLNCYEERDYSEYFEINH

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