Scaffold Ga0316223_1116471

Overview

Basic Information

• Taxon OID: 3300032560
• Scaffold ID: Ga0316223_1116471
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18009
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 925
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001219	Metagenome / Metatranscriptome	744	Y
F092118	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316223_11164711	F001219	N/A	MILSRTFFVSSSGLFDFDLTFPTQALLFLILSFAVTFFFISPISKQLDARAQFINYNLRKSTILLAFGYEKLSKCVGLLAEEIDEMNRQVKLVKDYTNHQFDSEVELIQQENLDILNELKGDLTIKSAFIFETVTKDLDTRTESFFSQRFQSD
Ga0316223_11164712	F092118	N/A	MTIMICNLSNSFSLFLNNEEPFIEFNTNILETNLVNIILLICLLLYANKVSFSISLKQRQADIVQTIENAQKDVVDASNYYFLAEKGFTQSLFWLQSWRNFYQKEKLTIVTSKYEAAKK