NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316223_1038498

Scaffold Ga0316223_1038498


Overview

Basic Information
Taxon OID3300032560 Open in IMG/M
Scaffold IDGa0316223_1038498 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18009
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1987
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083801Metagenome112Y
F098552Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0316223_10384981F098552N/AITSKQLHEQTALMLDRAKGGQRMKIIRNGSPAAWLIPAEEEIDPSWDEIMAEVRKVRAKGGPTRPNPILAERKKRHYATRIR
Ga0316223_10384982F083801N/AMPLVYADTSALFAYLHPDDEFSGEVDAAVQKHAPDFVYWIFLRYELRHNLRLARIDSAGEAAWQALRAAEKTSARLRWQEDLKADHMLDAADELSAEKARNFDCGSSDYLHVSAARRLNLLAGLDDFWTCDAAQARLARSVGLKTRLFKITRRLA

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