NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348332_12044809

Scaffold Ga0348332_12044809


Overview

Basic Information
Taxon OID3300032515 Open in IMG/M
Scaffold IDGa0348332_12044809 Open in IMG/M
Source Dataset NameFICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)877
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0431Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034304Metagenome / Metatranscriptome175Y
F055993Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0348332_120448091F055993AGGMSTPVLAPSIPMLGSLKKKRVLLVDTSPAKRDLRAETMRKLGMEVDCAADISEARSWWRSDLYNLVLISAENELGIRDRFCEDMRSAVPPQHLAFLVGRPEYLANSPNADEALSVQKDGDQSLLANVRAVLAADVAGGLPQRWGILEACRRISAARSVANARSKAVQEKPAPPRDSETRLSRRATETRTLDELLREEMQ
Ga0348332_120448092F034304AGGAGMSGINGDKSRFHRQRKQKIAQRKRNRELLKGLTERRTPVAGAPGSKPKAVSA
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Institute for Fundamental Biomedical Research
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