Scaffold Ga0348332_11960004

Overview

Basic Information

• Taxon OID: 3300032515
• Scaffold ID: Ga0348332_11960004
• Source Dataset Name: FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1844
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.0431
  • Long. (^o): 13.617

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030254	Metagenome / Metatranscriptome	186	Y
F031230	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0348332_119600041	F031230	AGGAGG	MKRTLTGLLLAGATCAFVLATPAVAQVAGNPGDLHTPTPYTNEVRANSYGYTPGYGGALGPLGVLTAPVAAVNGGPSGGGCGISQDFNGRLTALCGL
Ga0348332_119600042	F030254	AGGAGG	MNNAFLALTAAGFAGLSGFGINAQTSPVQTAQVVNSTPDYTQEAGVFSQWLSPDAPQCVAVSKIGSVAHLTKLTHEQFQFVRALYIAIPPISRALPPGDSAMIASANGHSMVALVSGGEACARFLAPDFVLSMLTQVGKGETEAAGDPI