NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348332_10113973

Scaffold Ga0348332_10113973


Overview

Basic Information
Taxon OID3300032515 Open in IMG/M
Scaffold IDGa0348332_10113973 Open in IMG/M
Source Dataset NameFICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1325
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0431Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084683Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0348332_101139732F084683GGTGGMNRLESILFWSALSFEITLCGFVFTRKVHRILPLFATYTYVVLAGAIGGWLIYEHFGYYSLISYYAYWGSVLLNAVARGFAIAELCRYGLRAYRGIWALVWRALAGLSVLLVARAAIDAWGEPNKVGIYGATLDRDLALASFAILAALLLIQNYYGLVVEPLQKAIAFGICLISAVDVIGNTILRNLFTGSLFSWFLTSQEIRSPLSIQFERVRDMWSAIHLFSFMVSMGIWCYALRKPLPAPSGRPVLLPAEVYRELSPAINMRLSAFNDRLVELLKPL
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