NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0352992_1024766

Scaffold Ga0352992_1024766


Overview

Basic Information
Taxon OID3300032496 Open in IMG/M
Scaffold IDGa0352992_1024766 Open in IMG/M
Source Dataset NameMetatranscriptome of Cow rumen rumen associated fungal communities from Illinois, USA - Cow Y-3 switchgrass (Eukaryote Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1144
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)40.102108Long. (o)-88.227299Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003473Metagenome / Metatranscriptome484Y

Sequences

Protein IDFamilyRBSSequence
Ga0352992_10247661F003473N/APKPYKLFVDPFGSFTYLFKPLNSTSTLPGEGAPLEFTNSLGKFKGVWKNDFFYLTDDRLMNFRMDYLEITEKDSKFQCDGVLGLGYSFSQSYGNIYEVLAKMYNVFPSKKVLSYDKKKMQITLGEIPERSNYNPTVYPIYEKPDYPGTFIQLEKLRFMTDYDQTKYLSEEDLKDDALLTLLPVIIAPKHRLKNLYTNYTTIFNTSKSTYSKKGEIKDNWKFYSDFYLTNPNKHMDYIELVFDRMAYKFKPWEEKDGKFRPKIRFGNDEKYLFKYWIVGIDVIGVDRFDINFEDNNIKLYSKPSYDITKSKPQLLRDVFVYMTVICVMLCFMFLVFCQKKRAKDIKPGEELIELN
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