Scaffold Ga0352992_1024356

Overview

Basic Information

• Taxon OID: 3300032496
• Scaffold ID: Ga0352992_1024356
• Source Dataset Name: Metatranscriptome of Cow rumen rumen associated fungal communities from Illinois, USA - Cow Y-3 switchgrass (Eukaryote Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 919
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location

• Location Name: USA: Illinois
• Coordinates
  • Lat. (^o): 40.102108
  • Long. (^o): -88.227299

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043183	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0352992_10243561	F043183	N/A	VEGLGGATSTSIDRKLHLGDLLVNVLHELNDEIDKLALVKSLSVYVSDKEADIISDLRTIIKSLNDRLTTKNKEVISTLSKETHETLCKDGIKFIELLQANANANAVNRGLNKNTFLFVTSDNNRVAKELLAEFALNLRLIVTLNNLAAKVCNTHSSSDSV