Scaffold Ga0352984_1021135

Overview

Basic Information

• Taxon OID: 3300032476
• Scaffold ID: Ga0352984_1021135
• Source Dataset Name: Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-1 corn stover (Eukaryote Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1147
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Archamoebae → Mastigamoebida → Entamoebidae → Entamoeba (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location

• Location Name: USA: Illinois
• Coordinates
  • Lat. (^o): 40.102108
  • Long. (^o): -88.227299

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066347	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0352984_10211351	F066347	AGGAGG	VRRNNNNIIEFVPFSVLRVPSHRTCLRPANKGPLGCTTSLTRANGDVNLLASTVENLKKGGDTSTHADVQVSLRALDVIVQVVAEGEHNIASILALVGGIVTSLKKEGSITVSTEVADTGKLGWRVLQVGVASRGTRHVLAELVQEHVAKDDIILIIKVDGEDDNDAVTVLLEPDGLVGTVVDLNDLATSSTLRSLIHHLVEDGCKEVAGHAGGETRDLSSISLGVDLADSDGDGDIVLGLGAGQKAAVDLLEVLLTTVGLNLIPALARDGNVKLALVGPQMPDNLVEICDCDIDFLSLLSDELGVDDIVNDAVVSLKSQRGCHFL