NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335396_10698814

Scaffold Ga0335396_10698814


Overview

Basic Information
Taxon OID3300032462 Open in IMG/M
Scaffold IDGa0335396_10698814 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)621
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011277Metagenome292Y
F011561Metagenome / Metatranscriptome289Y

Sequences

Protein IDFamilyRBSSequence
Ga0335396_106988141F011277GGGGGMNMIVKTPGSQMGSPAAVEEGGEEVGGGRWESGERSEVQARSTLTSTAPKARSRSGEVATLDEVPRISL
Ga0335396_106988142F011561N/AHRAQQRSTPVKREAVIAGLASEGLALILGSAEVGSSAVVGPMPTNPVEFRKCARDLKALSAATEQSKEERGGGRDPGVRRPGAGRGQLPASSKIFRAALSSCSCHPTVHC

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