Scaffold Ga0335396_10630562

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335396_10630562

Scaffold Ga0335396_10630562

Overview

Basic Information
Taxon OID	3300032462 Open in IMG/M
Scaffold ID	Ga0335396_10630562 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	664
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Fryxell
Coordinates	Lat. (^o)	-77.605	Long. (^o)	163.163	Alt. (m)		Depth (m)	18
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001140	Metagenome	766	Y
F060621	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335396_106305621	F001140	AGG	MEGQCKDGVRDHGLALLIVTARERRGLLGVGFENMMRSWVMK
Ga0335396_106305622	F060621	N/A	WNRCGDNDQIANRDLKLKFISIRKVKTEEEKVKHTHRFKDRISVIQQR

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