Scaffold Ga0335396_10438593

Overview

Basic Information

• Taxon OID: 3300032462
• Scaffold ID: Ga0335396_10438593
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 837
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002264	Metagenome / Metatranscriptome	576	Y
F004445	Metagenome	437	Y
F043232	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335396_104385931	F004445	GGAGG	VQGRSEKRWRGIAHRRGGREARLARGGIREHDAFLGHEMRGPAGTGRGGVWMGG
Ga0335396_104385932	F043232	GAG	MSKPTALYTEGTAQVSEWLNISDIAKKLYEGKSNSGIAVVITTKLQKGT
Ga0335396_104385933	F002264	N/A	EALRAAAPEWTFEQINFVVGRRGAVVEDDIYNKLEKLNVQAGKRDKILFAHVQRICEAHDTVMRSYYQQIHGSSRADATMSMENIGEQVYV