NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335396_10188286

Scaffold Ga0335396_10188286


Overview

Basic Information
Taxon OID3300032462 Open in IMG/M
Scaffold IDGa0335396_10188286 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1358
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007211Metagenome / Metatranscriptome355Y
F031770Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0335396_101882861F007211N/AMVGQQGHTRKMTLLEAPTGTLLFYYKDFKQKIVHTSLLEGYGVSKKWVIIMDRRQDLNVTSTPAEKSGPSAQDRYCARGLGGGAKKQHANEKEQKKV
Ga0335396_101882862F031770N/AMRVYHRSFLTLACVCVGGLEVGFVLACSWLALVTGVGGYVLVGVEIGVLSCIFFCLC

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