Scaffold Ga0335396_10058083

Overview

Basic Information

• Taxon OID: 3300032462
• Scaffold ID: Ga0335396_10058083
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2582
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003538	Metagenome / Metatranscriptome	480	Y
F013982	Metagenome	266	Y
F062462	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335396_100580833	F062462	N/A	MNFFGEGRWGVAQDKGGLLVGGEGAPIWLAGVTEKGCEELDQIQCDMRGCWAFQDEVDLRASHSQRAVEAYSRVISISLVVNYGEHVGANGLMTLGPKSEERHRVHCEVGREFV
Ga0335396_100580834	F013982	GGA	MCLGNSVFNGVLRVSITATKFAPEVIKFCCDCVGVENSVSEVKGYHLERLLQDEGRNAKFNHCDVWGS
Ga0335396_100580837	F003538	N/A	CPIGMSLPADSYCEGRVSLHFTQPGLSITTAAGVVHEKGSEYILAHTGPRELDGHPLGGCGSGFGSVPGYTTLSVRVRAKT