NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335398_10477257

Scaffold Ga0335398_10477257


Overview

Basic Information
Taxon OID3300032435 Open in IMG/M
Scaffold IDGa0335398_10477257 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)928
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000489Metagenome / Metatranscriptome1084Y
F004445Metagenome437Y

Sequences

Protein IDFamilyRBSSequence
Ga0335398_104772571F004445GGAGGVQRRSEKRCRGIDRRGGREARLARGGIREHDAFLGHEMR
Ga0335398_104772572F000489N/ALYILEFKRSSDRNKDFLRVKEDEANEQHRSIIEALRAAAPEWMFEQINFVAGRRGAVVEDDFYNKLEKLNVQAGNTDKILLAHVQRICEAHDTVMRSYYQQIHGSSRADATMSMENIGGQVYV

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