Scaffold Ga0335398_10062213

Overview

Basic Information

• Taxon OID: 3300032435
• Scaffold ID: Ga0335398_10062213
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3771
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014584	Metagenome	261	Y
F021480	Metagenome	218	Y
F027750	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335398_100622132	F021480	AGTAGG	VGAKVLCRFKKIPALEVVTGNVNVGSLPTINVGQVEGGEVETFHSPEGANSSA
Ga0335398_100622133	F027750	GAG	VVTIDMESASKGEVEASLEVLNISSTLDIAQILEEMR
Ga0335398_100622139	F014584	N/A	LRRGFESRGGGGGQVRVEVDRRMICDTGGERIAEYFALLDEGDMMFSDEIVVKDRVGVRFTEKGVGSKGVMRDRKVAISDNKFERIDYIQE