Scaffold Ga0335398_10047311

Overview

Basic Information

• Taxon OID: 3300032435
• Scaffold ID: Ga0335398_10047311
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4388
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000489	Metagenome / Metatranscriptome	1084	Y
F057910	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335398_100473112	F000489	GGAGG	VINKNHRTLYIIEFKWSSDRNANFLGVKEDEANEQLEHKSIEMLKAAAPEWTFKQINLVALRRGAVVEDDFYNKLERPSVQAGKMDKILLAHVHCICEAHDTIIRSYYQQIHGSSRADAMTSVENIREQVYE
Ga0335398_100473118	F057910	N/A	LSGPGSQCLGTGLLRPGQCWQGGKGDSRDTSTFVTRCPIGMSLPEDSSCEGRVSLHFTQSGLSMPAVAGVVDEKGSEYILAHTGPRELDGHPLGVCGSGFGLVPGYTTLSVRVRGNT