Scaffold Ga0335398_10043944

Overview

Basic Information

• Taxon OID: 3300032435
• Scaffold ID: Ga0335398_10043944
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4571
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000291	Metagenome / Metatranscriptome	1361	Y
F004150	Metagenome / Metatranscriptome	450	Y
F031769	Metagenome	181	Y
F083736	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335398_100439445	F004150	N/A	VKIAFIIADTRNNVVVLFGTLKVQSFMLTEVRDCDLLIVVTPSTFLKRKDMLKEKSS
Ga0335398_100439446	F000291	GGTGG	VRLYTRIHTQTTWVLDVSPGVGRTPGEPEESRSTKVQYTCRPYRCTQYICLYICCAAGFDDLG
Ga0335398_100439447	F083736	GGAGG	MGFVSACSWLALVTDVRGYVLARVEIRVLSCIFLYFCGC
Ga0335398_100439449	F031769	GAG	MHFTGVLGTSAWAGVYVTQVYFYTNVHICEHTRCRLCTYVYMYICVYMHAYAYGCVCASMILLETLRRCC