Scaffold Ga0335398_10011240

Overview

Basic Information

• Taxon OID: 3300032435
• Scaffold ID: Ga0335398_10011240
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10091
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006176	Metagenome	379	Y
F015437	Metagenome	254	Y
F063383	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335398_100112405	F063383	GGAG	MPWPESLVHIQARCPALQKPRIAVHHGIWRELPTAISRNSVESYDDGNRKWYFLSVVSEATHDKWTVRQILVHLGLFSEIKSLKVDVTKFHAGQGIVLTDVEITSFYSRRRDGVAFDDKNKHCVFLEFTRPMDSVTLSPEGDWAERKELEKNARYGIMMHIYFINHLSALHGGPWNCTQANFTVGARGSLKQTQFQDRLRLLGVTNSEARDKIRALTVSKTLALSDIILKLFHVSILRSPEWALSSLPTELANSQTSAFKLFKKFTGPFSGLVI
Ga0335398_100112407	F015437	AGG	VFDAGPFRVRKYESVVIGLGTSVKVVSEEQKASLLDSRPCCWLMVNSACARLECMRVPLVKGKQQ
Ga0335398_100112408	F006176	AGG	MEWWAAVRGMMLFIGKPIGRSIMISNATHSLKESRKESLLRYAGCASICAWLVCDLVVKCVQAVGDRALGDLCVCVRCGSVQSQKV