Scaffold Ga0310812_10042980

Overview

Basic Information

• Taxon OID: 3300032421
• Scaffold ID: Ga0310812_10042980
• Source Dataset Name: Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1712
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -78.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022547	Metagenome / Metatranscriptome	214	Y
F033171	Metagenome	178	Y
F042516	Metagenome / Metatranscriptome	158	Y
F045396	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310812_100429801	F033171	AGGAGG	LVVWTRDERLTFDIAFALKKVTIPGSRKELKDEERIAIAQTILDHLKLCAWEFSKPSMQ
Ga0310812_100429802	F022547	N/A	MKYVEKHFTLRIRRRDGTLKLLLGVTGSPPNIVPLRRSRWAKDEVLKVKVVDHPRRDEPAEAIEV
Ga0310812_100429803	F045396	GGAGG	MDQWTPQKRLVSTYSRAFRRRQNFHRTGVGIAGTIIATGLAFIGAAVIRLELLEFLRADIFSIVLGFTFVLLGVIAIAAYGVVRAIEWFSR
Ga0310812_100429804	F042516	GAGG	MSENGASAKTEPYSPTEQRVPTGYRVYLLPGALEICARLGTPEEVRNLIKVLRAGILILQDTTEGDMDEPLSLAAKRATAVRAASKV