Scaffold Ga0315275_10473069

Overview

Basic Information

• Taxon OID: 3300032401
• Scaffold ID: Ga0315275_10473069
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1404
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5111
  • Long. (^o): -110.3555
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F050366	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315275_104730691	F050366	N/A	EVMAAIKTPAADYDYWTTKHGDVPSYKTSEEAEQSGTPSFGSSDDSAWSSDATPLCVHGSMRWNQSKPNAPKPWAGYFCSEKIKEKQCRPNWYVMTSDGTWKPQV
Ga0315275_104730692	F000403	N/A	MEATGVMVSDFVEIIYPQQMMARLMCNGEIVEEYKMEQCDKCSQLRRLDHFGYQKGYDKQDNIIWFCGDCR
Ga0315275_104730693	F000903	AGGAGG	MIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEFVVAKKLGYDYTPGITWDKSKADVGDHIEVKWSANPASNLWIQESDRHDRDIAVLVTGSSPKMHIVGWMPVAIAKKPRYRNTSQNNWSVPQINLQPIETLQRSNYAHPAI