NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315275_10005962

Scaffold Ga0315275_10005962


Overview

Basic Information
Taxon OID3300032401 Open in IMG/M
Scaffold IDGa0315275_10005962 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11599
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5111Long. (o)-110.3555Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065720Metagenome / Metatranscriptome127Y
F067673Metagenome125N
F101045Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0315275_100059621F065720N/ALVMKLLRWFYELSQKDLTSQDAQKDDKLKQNLLARIDARERELLVESNLRAKRAASALSRIDKSPRVGFRFKRPPSPITKQDNNS
Ga0315275_100059623F101045GGAGLVVLALSMLSGGVTLNVFTHLQDYTLINSSIENIPEDIKIRIWVRDNFDKTKLRRPCEVFFVPLINLSWIQKMRMCARFAREAQEAWFGYAHDDATISREDFSKMLEARKTAGDNIYWIVTNNPKRPEINADIYALFNTKNYWAIGGHDEGFHMYYADIDFHIRQAHNGKSQLGVCTTSTTHIGSIVLKRLEGLEAELYKLQLEKDKAYFKIKHPTVDV
Ga0315275_100059627F067673N/AMNSLIQQVSETVGVLPDSQDKESQVLGWLNRAAVMIYDQYDLPGSVFEQFFCVDNNQHVVTFPWYVGAIRGVRWHDSSRLITLTDMRPRYHGVPWTQPYLKWRQIQSTPLHTPLTNAGPLTFQINAAETQPFDVIVNGQTSRAANVTEILTFNVGDTVKATVNLFEPESPFGITSIKKSRYTNSDVIILNSATQGEIGRIPNNQLYASNLRVQILDYNASTPFIIGEDCVEVLFKQRFSPFVNLDSIWTDERLIQALVYAVKYIYAMEKEKMDVASASKDMFETICKKVCENLESGTELMIQTERHATQDAAIMFPTYTFAMGGVRNI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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