Scaffold Ga0315287_10480816

Overview

Basic Information

• Taxon OID: 3300032397
• Scaffold ID: Ga0315287_10480816
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1475
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015570	Metagenome	253	Y
F032957	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315287_104808163	F015570	GAGG	MNDKLDEAFDELEFDDVTDQIRNSTYLAEQKKISTGVTDGSIQRALVRDLTENLRSLPVSNDPLLIRNDVLEEVAVELARLPFGDTAASYAAFVRAMKS
Ga0315287_104808166	F032957	AGGAG	MDDFNPTTRMFSRSLREAYPKEYVNENIFEGPYYSAPHINDVWVLFGLIAVISMVAVALWRCF