Scaffold Ga0315287_10088631

Overview

Basic Information

• Taxon OID: 3300032397
• Scaffold ID: Ga0315287_10088631
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3494
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084004	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315287_100886313	F084004	N/A	MRLLDIAAFGVSARQNPQEGFIMERCMRTTVAILVLLAAGGLAARAGNDSLEFVYDCFIARFSDGNPAWKTEITLEADLNKPPRPPYRLHYDDSLGYYTYRPKHWSELNDYERFALRNDPRLSDFIRQNADSLRNGQFGVFAGSTNATQAALKPGAGARDQSNIARTGRLEHAPAAEATSTDSQNAGVLTQEGENRWGYCFEPGDLLNSKPLRLVEVAP