Scaffold Ga0325404_1042938

Overview

Basic Information

• Taxon OID: 3300032390
• Scaffold ID: Ga0325404_1042938
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2944
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002704	Metagenome	535	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325404_104293810	F002704	GAG	MDGSKGHNFPSDRWIAIKLLQEFPDALFHGVDEESILDDDEVWSSQAGWTVRKAITFNPTVGSRSNFFWSFRMNFSMEWMRNRYSMMMTCGRAKLDGRFERP
Ga0325404_10429383	F002704	GAG	MDGSKGYNFPSDRWIAIKLLLEFPDELFHGVDEESILADDEVWSSQAGWTGRKAITFDATVGSRSNFYRSFRMHFSTQWMSNRYSVMMRSGPARLDGRFERP
Ga0325404_10429387	F002704	GAG	MDGSKGHNFQSDRWIAIKLLLEFPDELFHGVDEESILADDEVWSSQAGWTGRKAITFDATVGSRSNFYRSFRMHFSTQWMSNRYSVMMRSGPARLDGRFERP
Ga0325404_10429389	F002704	GAG	MDGSKGHNFRSDRWIGIKLLLEFPDALLHGVDEESILDDDEVWSSQAGWTVRKAITFNPTVGSRSNYYWSFRMHFSIERMRNRYSMMMRSGRARLDGRFEMP