Scaffold Ga0325404_1001871

Overview

Basic Information

• Taxon OID: 3300032390
• Scaffold ID: Ga0325404_1001871
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22336
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003668	Metagenome	474	Y
F016282	Metagenome	248	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325404_10018711	F003668	N/A	LNPSSITPDIVKNIRRGQTVSSERDSNSWTVTVQVFVNE
Ga0325404_10018712	F016282	GGA	LASIHLVYVRIPGKGIALYQLLWGGDDDTSEIGIGNVISKSNHVNLIRYGMKVDSGRGNG