NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325404_1001638

Scaffold Ga0325404_1001638


Overview

Basic Information
Taxon OID3300032390 Open in IMG/M
Scaffold IDGa0325404_1001638 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23696
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (43.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016345Metagenome247N
F092973Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0325404_100163821F092973N/AMIFGFVEERMCVYSLLAAASFCPPSFLLAAASFSLSFYMLRNPSLYFTK
Ga0325404_100163830F016345N/AMFQFGLHQHLFSKFGHLFVLSISVLQLINQFFHLCDRPAFKMNIYHKLKISYIIRYVIIKHVLVKELLILQVQNDDIKP

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