Scaffold Ga0325404_1000117

Overview

Basic Information

• Taxon OID: 3300032390
• Scaffold ID: Ga0325404_1000117
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74538
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (38.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038486	Metagenome	165	Y
F043970	Metagenome	155	N
F087982	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325404_100011725	F038486	AGG	MEDSTDNPSANIIPFPTRTILDGEIIQTYAMGTHLNKAIKADSSIPMDFNPNRIIKQDNPLHSQTPMLWGRHPVMIFMR
Ga0325404_100011760	F087982	AGTAG	VESPFCYYDLVEINSKARLHNVNDVFVFAKQCQQIYYTYTSFFRNDCSRVDWLSILKMKPKGRVEVVQDENEDTSVGDDVFQVIELVEPYRVAPSIDLEKNSIFCAFDNSKS
Ga0325404_100011762	F043970	N/A	MYLLFLFGFFIIINVLFSNEVSFNISIGCWSLNELFQKIQRRNLEQRIEEKFS