NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1019913

Scaffold Ga0325405_1019913


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1019913 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5899
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011092Metagenome295Y
F026451Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_101991310F026451N/ALKPFRRKAWSFLRILRWAGHLIFRLFLRKAWSFLRILRWAGHPILRSFFRKAWSFLKNFKRGRLADIETVS
Ga0325405_10199135F026451N/ALRPFLRKAWSFLRFLRWAGHLILRPFFRKAWSFLRILRWAGHPILRPFHRKAWSFLKNFKRGRLPDIETVS
Ga0325405_10199136F011092GAGGVILKPFLRKAWSFRRILRWASNLILRPFLKKEWSFLRILSWAGHPILRSFLRKAWSFLKNFERGR
Ga0325405_10199137F026451N/ALKPFLRKAWSFLRILRWVGHLIFSLFLRKVWSFLRILRWAGHPILRSFFRKAWSFLKNFKRGRLADIETVS
Ga0325405_10199138F026451N/ALRPFVRKAWSFLRILRWAGHLIVRLFLRKAWSFQRILRWAGHQILRSFLRKAWSFLKNFERGRLLDIETVS
Ga0325405_10199139F011092GAGGLILKPFLRKAWSFLRILRWASNLILRPFLTNAWSFLRILRWAGHPILRSFLIKAWSFLKNFERGR

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